There are a number of fields for including circos plots in the report. Circos plots are a useful way to look at an overview of variants for a particular sample.
These will be passed to the report upload function via the images section of the JSON input
Copy Number Circos Plot¶
This plot will be included in the copy variants section of the report
Structural Variant Circos Plots¶
These plots will be included in the structural variants section of the report
Microbial Integration Circos Plots¶
This plot has its own section, along with the microbial integration fields. It is generally used to describe viral genome integration such as HPV16.