btllib::SeqReader::Flag Struct Reference

Static Public Attributes
static const unsigned	FOLD_CASE = 1
static const unsigned	TRIM_MASKED = 2
static const unsigned	SHORT_MODE = 4
static const unsigned	LONG_MODE = 8

Member Data Documentation

FOLD_CASE

const unsigned btllib::SeqReader::Flag::FOLD_CASE = 1

static

Fold all nucleotides into upper case.

LONG_MODE

const unsigned btllib::SeqReader::Flag::LONG_MODE = 8

static

Optimizes performance for long sequences (approx. >5kbp)

SHORT_MODE

const unsigned btllib::SeqReader::Flag::SHORT_MODE = 4

static

Optimizes performance for short sequences (approx. <=5kbp)

Examples

seq_reader.cpp.

TRIM_MASKED

const unsigned btllib::SeqReader::Flag::TRIM_MASKED = 2

static

Trim masked (lower case) characters from the ends of sequences.

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The documentation for this struct was generated from the following file:

• include/btllib/seq_reader.hpp