btllib::Indexlr::Flag Struct Reference

Static Public Attributes
static const unsigned	NO_ID = 1
static const unsigned	BX = 2
static const unsigned	SEQ = 4
static const unsigned	FILTER_IN = 8
static const unsigned	FILTER_OUT = 16
static const unsigned	SHORT_MODE = 32
static const unsigned	LONG_MODE = 64
static const unsigned	QUAL = 128

Member Data Documentation

BX

const unsigned btllib::Indexlr::Flag::BX = 2

static

Include barcode along with minimizer information.

FILTER_IN

const unsigned btllib::Indexlr::Flag::FILTER_IN = 8

static

Only include minimizers found in the first Bloom filter argument.

FILTER_OUT

const unsigned btllib::Indexlr::Flag::FILTER_OUT = 16

static

Filter out minimizers found in a Bloom filter argument. If FILTER_IN is NOT enabled, then use the first Bloom filter argument. If both FILTER_IN and FILTER_OUT flags are enabled, FILTER_IN uses the first Bloom filter argument and FILTER_OUT uses the second.

LONG_MODE

const unsigned btllib::Indexlr::Flag::LONG_MODE = 64

static

Optimizes performance for long sequences (approx. >5kbp)

NO_ID

const unsigned btllib::Indexlr::Flag::NO_ID = 1

static

Do not include read ID information. May improve performance.

QUAL

const unsigned btllib::Indexlr::Flag::QUAL = 128

static

Include read sequence Phred score along with minimizer information.

SEQ

const unsigned btllib::Indexlr::Flag::SEQ = 4

static

Include read sequence along with minimizer information.

SHORT_MODE

const unsigned btllib::Indexlr::Flag::SHORT_MODE = 32

static

Optimizes performance for short sequences (approx. <=5kbp)

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The documentation for this struct was generated from the following file:

• include/btllib/indexlr.hpp