Comparators

This is used to provide details on how outlier evaluations were performed by listing the cohorts that were used in the comparisons

{
    "comparators": [
        {
            "analysisRole": "mutation burden (primary)",
            "name": "average"
        },
        {
            "analysisRole": "expression (disease QC)",
            "name": "qc_tcga_comp_TARGET_RHD_percentile_median_(6)",
            "size": 6
        },
        {
            "analysisRole": "expression (primary site)",
            "name": "average",
            "size": 1024
        }
    ],
}

Field	Type	Example	Description
analysisRole (required)	string		key indicating which analysis this comparator was used for
name (required)	string	"TCGA BRCA"	comparator name
size	number		the number of samples included in the cohort/reference distribution

The field analysisRole can have the following values, each can only be used once per report

• cibersort (primary)
• cibersort (secondary)
• mixcr (primary)
• mixcr (secondary)
• HRD (primary)
• HRD (secondary)
• expression (disease)
• expression (disease QC)
• expression (primary site)
• expression (primary site QC)
• expression (biopsy site)
• expression (biopsy site QC)
• mutation burden (primary)
• mutation burden (secondary)
• mutation burden (tertiary)
• mutation burden (quaternary)
• mutation burden SV (primary)
• mutation burden SV (secondary)
• mutation burden SV (tertiary)
• mutation burden SV (quaternary)
• protein expression (primary)
• protein expression (secondary)