Circos Plots¶

There are a number of fields for including circos plots in the report. Circos plots are a useful way to look at an overview of variants for a particular sample.

Info

These will be passed to the report upload function via the images section of the JSON input

Copy Number Circos Plot¶

key: cnvLoh.circos

This plot will be included in the copy variants section of the report

circos

Structural Variant Circos Plots¶

keys: circosSv.genome, circosSv.transcriptome

These plots will be included in the structural variants section of the report

circos

Microbial Integration Circos Plots¶

keys: microbial.circos.genome, microbial.circos.transcriptome

This plot has its own section, along with the microbial integration fields. It is generally used to describe viral genome integration such as HPV16.