graphkb.util¶

VERBOSE_ERROR_CODE¶

VERBOSE_ERROR_CODE = (logging.INFO + logging.DEBUG) // 2

logger¶

logger = logging.getLogger('graphkb')

LOG_LEVELS¶

LOG_LEVELS = {
    'info': logging.INFO,
    'debug': logging.DEBUG,
    'warn': logging.WARN,
    'error': logging.ERROR,
    'verbose': VERBOSE_ERROR_CODE,

class IterableNamespace¶

inherits argparse.Namespace

convert_to_rid_list()¶

Given a list of records, return their record IDs

def convert_to_rid_list(records: Iterable[Record]) -> List[str]:

Args

records (Iterable[Record])

Returns

List[str]

looks_like_rid()¶

Check if an input string looks like a GraphKB ID

def looks_like_rid(rid: str) -> bool:

Args

rid (str)

Returns

bool

convert_aa_3to1()¶

Convert an Input string from 3 letter AA notation to 1 letter AA notation

def convert_aa_3to1(three_letter_notation: str) -> str:

Args

three_letter_notation (str)

Returns

str