seq_writer.hpp

#ifndef BTLLIB_SEQ_WRITER_HPP
#define BTLLIB_SEQ_WRITER_HPP
 
#include "btllib/data_stream.hpp"
#include "btllib/seq.hpp"
 
#include <cstdio>
#include <mutex>
#include <string>
 
namespace btllib {
 
class SeqWriter
{
 
public:
  enum Format
  {
    FASTA,
    FASTQ
  };
 
  SeqWriter(const std::string& sink_path,
            Format format = FASTA,
            bool append = false);
 
  void close();
 
  void write(const std::string& id,
             const std::string& comment,
             const std::string& seq,
             const std::string& qual = "");
 
private:
  const std::string sink_path;
  DataSink sink;
  bool closed;
  Format format;
  char headerchar;
  std::mutex mutex;
};
 
} // namespace btllib
 
#endif